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Selected Publications by our Faculty --- Reverse Chronological List

  1. France, DJ, Leming-Lee, S, Jackson, T, Feistritzer, NR, Higgins, MS. An observational analysis of surgical team compliance with perioperative safety practices after crew resource management training. Am J Surg, , , 2008

  2. Aronsky, D, Madani, S, Carnevale, RJ, Duda, S, Feyder, MT. The prevalence and inaccessibility of Internet references in the biomedical literature at the time of publication. J Am Med Inform Assoc, 14(2), 232-4, 2007

  3. C. Stowers and E. M. Boczko. Reliable Cell Disruption in Yeast. Yeast, 24, 533-541, 2007

  4. Dexheimer, JW, Brown, LE, Leegon, J, Aronsky, D. Comparing decision support methodologies for identifying asthma exacerbations. Medinfo, 12(Pt 2), 880-4, 2007

  5. E. M. Boczko, W. Kalies, K. Mischaikow. Polygonal Approximation for Flows . Toplology and its Applications, 154, 2501-2520, 2007

  6. Fitzhenry, F, Peterson, JF, Arrieta, M, Waitman, LR, Schildcrout, JS, Miller, RA. Medication Administration Discrepancies Persist Despite Electronic Ordering. J Am Med Inform Assoc, , , 2007

  7. Han, JH, Zhou, C, France, DJ, Zhong, S, Jones, I, Storrow, AB, Aronsky, D. The effect of emergency department expansion on emergency department overcrowding. Acad Emerg Med, 14(4), 338-43, 2007

  8. Hoot, NR, Zhou, C, Jones, I, Aronsky, D. Measuring and forecasting emergency department crowding in real time. Ann Emerg Med, 49(6), 747-55, 2007

  9. Johnson, KB, Gadd, C. Playing smallball: approaches to evaluating pilot health information exchange systems. J Biomed Inform, 40(6 Suppl), S21-6, 2007

  10. Levin, S, Aronsky, D, Hemphill, R, Han, J, Slagle, J, France, DJ. Shifting Toward Balance: Measuring the Distribution of Workload Among Emergency Physician Teams. Ann Emerg Med, , , 2007

  11. McCarthy, ML, Aronsky, D, Jones, ID, Miner, JR, Band, RA, Baren, JM, Desmond, JS, Baumlin, KM, Ding, R, Shesser, R. The Emergency Department Occupancy Rate: A Simple Measure of Emergency Department Crowding. Ann Emerg Med, , , 2007

  12. McGowan, CC, Cahn, P, Gotuzzo, E, Padgett, D, Pape, JW, Wolff, M, Schechter, M, Masys, DR. Cohort Profile: Caribbean, Central and South America Network for HIV research (CCASAnet) collaboration within the International Epidemiologic Databases to Evaluate AIDS (IeDEA) programme. Int J Epidemiol, , , 2007

  13. P. Hinow and E. M. Boczko. Molecular Siesmology: An inverse problem in nanobiology . The Journal of Theoretical Biology, 246, 145-158, 2007

  14. Pulley, JM, Brace, M, Bernard, GR, Masys, D. Evaluation of the effectiveness of posters to provide information to patients about a DNA database and their opportunity to opt out. Cell Tissue Bank, 8(3), 233-41, 2007

  15. Rosenbloom, ST, Crow, AN, Blackford, JU, Johnson, KB. Cognitive factors influencing perceptions of clinical documentation tools. J Biomed Inform, 40(2), 106-13, 2007

  16. Rosenbloom, ST, Miller, RA, Johnson, KB, Elkin, PL, Brown, SH. A model for evaluating interface terminologies. J Am Med Inform Assoc, 15(1), 65-76, 2007

  17. Sanders, DL, Gregg, W, Aronsky, D. Identifying asthma exacerbations in a pediatric emergency department: a feasibility study. Int J Med Inform, 76(7), 557-64, 2007

  18. Tabb, DL, Fernando, CG, Chambers, MC. MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. J Proteome Res, 6(2), 654-61, 2007

  19. Talbot, TR, Nania, JJ, Wright, PW, Jones, I, Aronsky, D. Evaluation of the microbiology of soft-tissue abscesses in the era of community-associated strains of methicillin-resistant Staphylococcus aureus: an argument for empirical contact precautions. Infect Control Hosp Epidemiol, 28(6), 730-2, 2007

  20. Zhang, B, Chambers, MC, Tabb, DL. Proteomic parsimony through bipartite graph analysis improves accuracy and transparency. J Proteome Res, 6(9), 3549-57, 2007

  21. Aphinyanaphongs, Y, Statnikov, A, Aliferis, CF. A comparison of citation metrics to machine learning filters for the identification of high quality MEDLINE documents. J Am Med Inform Assoc, 13(4), 446-55, 2006

  22. Brown, SH, Elkin, PL, Bauer, BA, Wahner-Roedler, D, Husser, CS, Temesgen, Z, Hardenbrook, SP, Fielstein, EM, Rosenbloom, ST. SNOMED CT(R): Utility for a General Medical Evaluation Template. AMIA Annu Symp Proc, , 101-5, 2006

  23. Butler, J, Speroff, T, Arbogast, PG, Newton, M, Waitman, LR, Stiles, R, Miller, RA, Ray, W, Griffin, MR. Improved compliance with quality measures at hospital discharge with a computerized physician order entry system. Am Heart J, 151(3), 643-53, 2006

  24. Carnevale, RJ, Aronsky, D. The life and death of URLs in five biomedical informatics journals. Int J Med Inform, , , 2006

  25. Carter, JS, Brown, SH, Bauer, BA, Elkin, PL, Erlbaum, MS, Froehling, DA, Lincoln, MJ, Rosenbloom, ST, Wahner-Roedler, DL, Tuttle, MS. Categorical information in pharmaceutical terminologies. AMIA Annu Symp Proc, , 116-20, 2006

  26. Dexheimer, JW, Jones, I, Chen, Q, Talbot, TR, Mason, D, Aronsky, D. Providers' beliefs, attitudes, and behaviors before implementing a computerized pneumococcal vaccination reminder. Acad Emerg Med, 13(12), 1312-8, 2006

  27. Elkin, PL, Brown, SH, Husser, CS, Bauer, BA, Wahner-Roedler, D, Rosenbloom, ST, Speroff, T. Evaluation of the content coverage of SNOMED CT: ability of SNOMED clinical terms to represent clinical problem lists. Mayo Clin Proc, 81(6), 741-8, 2006

  28. Hoot, N, Aronsky, D. An early warning system for overcrowding in the emergency department. AMIA Annu Symp Proc, , 339-43, 2006

  29. Jacques, PS, France, DJ, Pilla, M, Lai, E, Higgins, MS. Evaluation of a hands-free wireless communication device in the perioperative environment. Telemed J E Health, 12(1), 42-9, 2006

  30. Johnson, KB, Fitzhenry, F. Case report: activity diagrams for integrating electronic prescribing tools into clinical workflow. J Am Med Inform Assoc, 13(4), 391-5, 2006

  31. Joos, D, Chen, Q, Jirjis, J, Johnson, KB. An electronic medical record in primary care: impact on satisfaction, work efficiency and clinic processes. AMIA Annu Symp Proc, , 394-8, 2006

  32. Kohane, IS, Masys, DR, Altman, RB. The incidentalome: a threat to genomic medicine. JAMA, 296(2), 212-5, 2006

  33. Kurnik, D, Muszkat, M, Li, C, Sofowora, GG, Solus, J, Xie, HG, Harris, PA, Jiang, L, McMunn, C, Ihrie, P, Dawson, EP, Williams, SM, Wood, AJ, Stein, CM. Variations in the alpha2A-adrenergic receptor gene and their functional effects. Clin Pharmacol Ther, 79(3), 173-85, 2006

  34. Leegon, J, Aronsky, D. Impact of different training strategies on the accuracy of a Bayesian network for predicting hospital admission. AMIA Annu Symp Proc, , 474-8, 2006

  35. Levin, S, France, DJ, Hemphill, R, Jones, I, Chen, KY, Rickard, D, Makowski, R, Aronsky, D. Tracking workload in the emergency department. Hum Factors, 48(3), 526-39, 2006

  36. Lorenzi, N.M.. Foreward from the IMIA President. IMIA Yearbook of Medical Informatics, , 1, 2006

  37. Lorenzi, N.M., Murray, P.J., de Assis Moura, Jr., L., Goh, H.M., Huesing, S., Martin-Sanches, F., Eisenberg, F., Strachan, H.,. Strategy in a fishbowl - an invitation to determine the shape of IMIA in 2015. Methods of Information in Medicine, 45, 235-239, 2006

  38. Lorenzi, NM. Foreword from the IMIA President. Methods Inf Med, 45 Suppl 1, 1, 2006

  39. McCarthy, ML, Aronsky, D, Kelen, GD. The measurement of daily surge and its relevance to disaster preparedness. Acad Emerg Med, 13(11), 1138-41, 2006

  40. Miller, RA, Groth, T, Hasman, A, Safran, C, Shortliffe, EH, Haux, R, McCray, AT. On exemplary scientific conduct regarding submission of manuscripts to biomedical informatics journals. Methods Inf Med, 45(1), 1-3, 2006

  41. Pan, C, Kora, G, McDonald, WH, Tabb, DL, VerBerkmoes, NC, Hurst, GB, Pelletier, DA, Samatova, NF, Hettich, RL. ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal Chem, 78(20), 7121-31, 2006

  42. Pan, C, Kora, G, Tabb, DL, Pelletier, DA, McDonald, WH, Hurst, GB, Hettich, RL, Samatova, NF. Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics. Anal Chem, 78(20), 7110-20, 2006

  43. Pandharipande, P, Shintani, A, Peterson, J, Pun, BT, Wilkinson, GR, Dittus, RS, Bernard, GR, Ely, EW. Lorazepam is an independent risk factor for transitioning to delirium in intensive care unit patients. Anesthesiology, 104(1), 21-6, 2006

  44. Riddle, WR, DonLevy, SC, Qi, XF, Giuse, DA, Rosenbloom, ST. Equations to support predictive automated postnatal growth curves for premature infants. J Perinatol, 26(6), 354-8, 2006

  45. Riddle, WR, Donlevy, SC, Lafleur, BJ, Rosenbloom, ST, Shenai, JP. Equations describing percentiles for birth weight, head circumference, and length of preterm infants. J Perinatol, 26(9), 556-61, 2006

  46. Rosenbloom, ST. Approaches to evaluating electronic prescribing. J Am Med Inform Assoc, 13(4), 399-401, 2006

  47. Rosenbloom, ST, Crow, AN, Blackford, JU, Johnson, KB. Cognitive factors influencing perceptions of clinical documentation tools. J Biomed Inform, , , 2006

  48. Rosenbloom, ST, Harrell, FE, Lehmann, CU, Schneider, JH, Spooner, SA, Johnson, KB. Perceived increase in mortality after process and policy changes implemented with computerized physician order entry. Pediatrics, 117(4), 1452-5; author reply 1455-6, 2006

  49. Rosenbloom, ST, Miller, RA, Johnson, KB, Elkin, PL, Brown, SH. Interface Terminologies: facilitating direct entry of clinical data into electronic health record systems. J Am Med Inform Assoc, , , 2006

  50. Rosenbloom, ST, Qi, X, Riddle, WR, Russell, WE, DonLevy, SC, Giuse, D, Sedman, AB, Spooner, SA. Implementing pediatric growth charts into an electronic health record system. J Am Med Inform Assoc, 13(3), 302-8, 2006

  51. Sanders, DL, Aronsky, D. Detecting asthma exacerbations in a pediatric emergency department using a Bayesian network. AMIA Annu Symp Proc, , 684-8, 2006

  52. Sanders, DL, Aronsky, D. Biomedical informatics applications for asthma care: a systematic review. J Am Med Inform Assoc, 13(4), 418-27, 2006

  53. Slebos, RJ, Yi, Y, Ely, K, Carter, J, Evjen, A, Zhang, X, Shyr, Y, Murphy, BM, Cmelak, AJ, Burkey, BB, Netterville, JL, Levy, S, Yarbrough, WG, Chung, CH. Gene expression differences associated with human papillomavirus status in head and neck squamous cell carcinoma. Clin Cancer Res, 12(3 Pt 1), 701-9, 2006

  54. Strader, MB, Tabb, DL, Hervey, WJ, Pan, C, Hurst, GB. Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems. Anal Chem, 78(1), 125-34, 2006

  55. Tabb, DL, Friedman, DB, Ham, AJ. Verification of automated peptide identifications from proteomic tandem mass spectra. Nat Protoc, 1(5), 2213-22, 2006

  56. Tabb, DL, Shah, MB, Strader, MB, Connelly, HM, Hettich, RL, Hurst, GB. Determination of peptide and protein ion charge states by Fourier transformation of isotope-resolved mass spectra. J Am Soc Mass Spectrom, 17(7), 903-15, 2006

  57. Unertl, KM, Weinger, MB, Johnson, KB. Applying direct observation to model workflow and assess adoption. AMIA Annu Symp Proc, , 794-8, 2006

  58. VerBerkmoes, NC, Shah, MB, Lankford, PK, Pelletier, DA, Strader, MB, Tabb, DL, McDonald, WH, Barton, JW, Hurst, GB, Hauser, L, Davison, BH, Beatty, JT, Harwood, CS, Tabita, FR, Hettich, RL, Larimer, FW. Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states. J Proteome Res, 5(2), 287-98, 2006

  59. Weiss, JB, Lorenzi, NM. Interface design for patient-caregiver integrated network. AMIA Annu Symp Proc, , 1141, 2006

  60. Zimmerman, RK, Hoberman, A, Nowalk, MP, Lin, CJ, Greenberg, DP, Weinberg, ST, Ko, FS, Fox, DE. Improving influenza vaccination rates of high-risk inner-city children over 2 intervention years. Ann Fam Med, 4(6), 534-40, 2006

  61. Aphinyanaphongs Y, Tsamardinos I, Statnikov A, Hardin D, Aliferis CF. Text Categorization Models for High Quality Article Retrieval in Internal Medicine. Journal of American Medical Informatics Association, 2(12), 207-216, 2005

  62. Aronsky, D, Haug, PJ, Lagor, C, Dean, NC. Accuracy of administrative data for identifying patients with pneumonia. Am J Med Qual, 20(6), 319-28, 2005

  63. Boczko, EM, Cooper, TG, Gedeon, T, Mischaikow, K, Murdock, DG, Pratap, S, Wells, KS. Structure theorems and the dynamics of nitrogen catabolite repression in yeast. Proc Natl Acad Sci U S A, 102(16), 5647-52, 2005

  64. Brown LA, Tsamardinos I, Aliferis CF. A Comparison of Novel and State-of-theArt Polynomial Bayesian Network Learning Algorithms. Proceedings of the Twentieth National Conference on Artificial Intelligence (AAAI), , , 2005

  65. Bruehl, S, Chung, OY, Jirjis, JN, Biridepalli, S. Prevalence of clinical hypertension in patients with chronic pain compared to nonpain general medical patients. Clin J Pain, 21(2), 147-53, 2005

  66. Chung, CH, Levy, S, Yarbrough, WG. Clinical applications of genomics in head and neck cancer. Head Neck, , , 2005

  67. Collier, B, Diaz, J, Forbes, R, Morris, J, May, A, Guy, J, Ozdas, A, Dupont, W, Miller, R, Jensen, G. The impact of a normoglycemic management protocol on clinical outcomes in the trauma intensive care unit. JPEN J Parenter Enteral Nutr, 29(5), 353-8; discussion 359, 2005

  68. Denny, JC, Spickard, A, Miller, RA, Schildcrout, J, Darbar, D, Rosenbloom, ST, Peterson, JF. Identifying UMLS concepts from ECG Impressions using KnowledgeMap. AMIA Annu Symp Proc, , 196-200, 2005

  69. Dexheimer, JW, Gregg, W, Talbot, TR, Aronsky, D. Creating and validating a pneumococcal vaccination registry. AMIA Annu Symp Proc, , 201-5, 2005

  70. Dexheimer, JW, Sanders, DL, Rosenbloom, ST, Aronsky, D. Prompting clinicians: a systematic review of preventive care reminders. AMIA Annu Symp Proc, , 938, 2005

  71. Fananapazir, N, Li, M, Spentzos, D, Aliferis, CF. Formative evaluation of a prototype system for automated analysis of mass spectrometry data. AMIA Annu Symp Proc, , 241-5, 2005

  72. Fitzhenry, F, Peterson, JF, Arrieta, MA, Miller, RA. Measuring the quality of medication administration. AMIA Annu Symp Proc, , 955, 2005

  73. France, DJ, Levin, S, Hemphill, R, Chen, K, Rickard, D, Makowski, R, Jones, I, Aronsky, D. Emergency physicians'' behaviors and workload in the presence of an electronic whiteboard. Int J Med Inform, 74(10), 827-37, 2005

  74. Frisse, M. Giving more than a nod to the wave of the future. Manag Care, 14(6), 39-40, 42, 45, 2005

  75. Frisse, M, Marchibroda, J, Welebob, E. HIE takes shape in the states. J AHIMA, 76(8), 24-8, 30, 2005

  76. Frisse, ME. State and community-based efforts to foster interoperability. Tennessee''s brand-new data-sharing initiative has benefited from the experience of four other states. Health Aff (Millwood), 24(5), 1190-6, 2005

  77. Garland, EM, Winker, R, Williams, SM, Jiang, L, Stanton, K, Byrne, DW, Biaggioni, I, Cascorbi, I, Phillips, JA, Harris, PA, R??diger, H, Robertson, D. Endothelial NO synthase polymorphisms and postural tachycardia syndrome. Hypertension, 46(5), 1103-10, 2005

  78. Giuse, NB, Koonce, TY, Jerome, RN, Cahall, M, Sathe, NA, Williams, A. Evolution of a mature clinical informationist model. J Am Med Inform Assoc, 12(3), 249-55, 2005

  79. Grogan, EL, Norris, PR, Speroff, T, Ozdas, A, France, DJ, Harris, PA, Jenkins, JM, Stiles, R, Dittus, RS, Morris, JA. Volatility: a new vital sign identified using a novel bedside monitoring strategy. J Trauma, 58(1), 7-12; discussion 12-4, 2005

  80. Harris, PA, Lane, L, Biaggioni, I. Clinical research subject recruitment: the Volunteer for Vanderbilt Research Program www.volunteer.mc.vanderbilt.edu. J Am Med Inform Assoc, 12(6), 608-13, 2005

  81. Hoot, N, Aronsky, D. Using Bayesian networks to predict survival of liver transplant patients. AMIA Annu Symp Proc, , 345-9, 2005

  82. Jirjis, J, Weiss, JB, Giuse, D, Rosenbloom, ST. A framework for clinical communication supporting healthcare delivery. AMIA Annu Symp Proc, , 375-9, 2005

  83. Johnson, KB, Serwint, JR, Fagan, LM, Thompson, RE, Wilson, MH. Computer-based documentation: effect on parent and physician satisfaction during a pediatric health maintenance encounter. Arch Pediatr Adolesc Med, 159(3), 250-4, 2005

  84. Lorenzi, N.M.. E-Health Strategies Worldwide. IMIA Yearbook of Medical Informatics, , 157-164, 2005

  85. Lorenzi, N.M.. Progress Report by the President of IMIA. IMIA Yearbook of Medical Informatics, , 13-14, 2005

  86. Marco, AP, Greenwald, MK, Higgins, MS. A preliminary study of 24-hour post-cesarean patient controlled analgesia: postoperative pain reports and morphine requests/utilization are greater in abstaining smokers than non-smokers. Med Sci Monit, 11(6), CR255-261, 2005

  87. Miller, RA, Gardner, RM, Johnson, KB, Hripcsak, G. Clinical decision support and electronic prescribing systems: a time for responsible thought and action. J Am Med Inform Assoc, 12(4), 403-9, 2005

  88. Miller, RA, Waitman, LR, Chen, S, Rosenbloom, ST. The anatomy of decision support during inpatient care provider order entry (CPOE): empirical observations from a decade of CPOE experience at Vanderbilt. J Biomed Inform, 38(6), 469-85, 2005

  89. Moore, JH, Boczko, EM, Summar, ML. Connecting the dots between genes, biochemistry, and disease susceptibility: systems biology modeling in human genetics. Mol Genet Metab, 84(2), 104-11, 2005

  90. Narasimhan, C, Tabb, DL, Verberkmoes, NC, Thompson, MR, Hettich, RL, Uberbacher, EC. MASPIC: intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence. Anal Chem, 77(23), 7581-93, 2005

  91. Norris, PR, Morris, JA, Ozdas, A, Grogan, EL, Williams, AE. Heart rate variability predicts trauma patient outcome as early as 12 h: implications for military and civilian triage. J Surg Res, 129(1), 122-8, 2005

  92. Ozdas, A, Speroff, T, Waitman, LR, Ozbolt, J, Butler, J, Miller, RA. Integrating best of care protocols into clinicians'' workflow via care provider order entry: impact on quality of care indicators for acute myocardial infarction. J Am Med Inform Assoc, , , 2005

  93. Park, YK, Franklin, JL, Settle, SH, Levy, SE, Chung, E, Jeyakumar, LH, Shyr, Y, Washington, MK, Whitehead, RH, Aronow, BJ, Coffey, RJ. Gene expression profile analysis of mouse colon embryonic development. Genesis, 41(1), 1-12, 2005

  94. Peterson, JF, Kuperman, GJ, Shek, C, Patel, M, Avorn, J, Bates, DW. Guided prescription of psychotropic medications for geriatric inpatients. Arch Intern Med, 165(7), 802-7, 2005

  95. Pun, BT, Gordon, SM, Peterson, JF, Shintani, AK, Jackson, JC, Foss, J, Harding, SD, Bernard, GR, Dittus, RS, Ely, EW. Large-scale implementation of sedation and delirium monitoring in the intensive care unit: a report from two medical centers. Crit Care Med, 33(6), 1199-205, 2005

  96. Raj, SR, Black, BK, Biaggioni, I, Harris, PA, Robertson, D. Acetylcholinesterase inhibition improves tachycardia in postural tachycardia syndrome. Circulation, 111(21), 2734-40, 2005

  97. Rosenbloom, S Trent, Giuse, Nunzia Bettinsoli, Jerome, Rebecca N, Blackford, Jennifer U. Providing evidence-based answers to complex clinical questions: evaluating the consistency of article selection. Acad Med, 80(1), 109-14, 2005

  98. Rosenbloom, ST, Chiu, KW, Byrne, DW, Talbert, DA, Neilson, EG, Miller, RA. Interventions to regulate ordering of serum magnesium levels: report of an unintended consequence of decision support. J Am Med Inform Assoc, 12(5), 546-53, 2005

  99. Rosenbloom, ST, Geissbuhler, AJ, Dupont, WD, Giuse, DA, Talbert, DA, Tierney, WM, Plummer, WD, Stead, WW, Miller, RA. Effect of CPOE user interface design on user-initiated access to educational and patient information during clinical care. J Am Med Inform Assoc, 12(4), 458-73, 2005

  100. Rosenbloom, ST, Giuse, NB, Jerome, RN, Blackford, JU. Providing evidence-based answers to complex clinical questions: evaluating the consistency of article selection. Acad Med, 80(1), 109-14, 2005

  101. Sathe, N, Lee, P, Giuse, N. Sathe et al. respond. J Med Libr Assoc, 93(4), 425, 2005

  102. Shibao, C, Arzubiaga, C, Roberts, LJ, Raj, S, Black, B, Harris, P, Biaggioni, I. Hyperadrenergic postural tachycardia syndrome in mast cell activation disorders. Hypertension, 45(3), 385-90, 2005

  103. St Jacques, P, Sanders, N, Patel, N, Talbot, TR, Deshpande, JK, Higgins, M. Improving timely surgical antibiotic prophylaxis redosing administration using computerized record prompts. Surg Infect (Larchmt), 6(2), 215-21, 2005

  104. Statnikov A, Tsamardinos I, Dosbayev Y, Aliferis CF. GEMS: A System for Automated Cancer Diagnosis and Biomarker Discovery from Microarray Gene Expression Data. International Journal of Medical Informatics, , , 2005

  105. Statnikov, A, Aliferis, CF, Tsamardinos, I, Hardin, D, Levy, S. A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis. Bioinformatics, 21(5), 631-43, 2005

  106. Statnikov, A, Tsamardinos, I, Dosbayev, Y, Aliferis, CF. GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data. Int J Med Inform, 74(7-8), 491-503, 2005

  107. Tabb, DL, Narasimhan, C, Strader, MB, Hettich, RL. DBDigger: reorganized proteomic database identification that improves flexibility and speed. Anal Chem, 77(8), 2464-74, 2005

  108. Tabb, DL, Thompson, MR, Khalsa-Moyers, G, Verberkmoes, NC, McDonald, WH. MS2Grouper: Group Assessment and Synthetic Replacement of Duplicate Proteomic Tandem Mass Spectra. J Am Soc Mass Spectrom, 16(8), 1250-61, 2005

  109. Thomason, JW, Shintani, A, Peterson, JF, Pun, BT, Jackson, JC, Ely, EW. Intensive care unit delirium is an independent predictor of longer hospital stay: a prospective analysis of 261 non-ventilated patients. Crit Care, 9(4), R375-81, 2005

  110. Weiss, JB, Lorenzi, NM. Online communication and support for cancer patients: a relationship-centric design framework. AMIA Annu Symp Proc, , 799-803, 2005

  111. Xie, L, Xu, BJ, Gorska, AE, Shyr, Y, Schwartz, SA, Cheng, N, Levy, S, Bierie, B, Caprioli, RM, Moses, HL. Genomic and proteomic analysis of mammary tumors arising in transgenic mice. J Proteome Res, 4(6), 2088-98, 2005

  112. Yu, DT, Peterson, JF, Seger, DL, Gerth, WC, Bates, DW. Frequency of potential azole drug-drug interactions and consequences of potential fluconazole drug interactions. Pharmacoepidemiol Drug Saf, , , 2005

  113. Aphinyanaphongs, Y, Aliferis, CF. Learning Boolean queries for article quality filtering. Medinfo, 11(Pt 1), 263-7, 2004

  114. Aphinyanaphongs, Y, Tsamardinos, I, Statnikov, A, Hardin, D, Aliferis, CF. Text categorization models for high-quality article retrieval in internal medicine. J Am Med Inform Assoc, 12(2), 207-16, 2004

  115. Aronsky, D, Kasworm, E, Jacobson, JA, Haug, PJ, Dean, NC. Electronic screening of dictated reports to identify patients with do-not-resuscitate status. J Am Med Inform Assoc, 11(5), 403-9, 2004

  116. Aronsky, D, Ransom, J, Robinson, K. Accuracy of references in five biomedical informatics journals. J Am Med Inform Assoc, 12(2), 225-8, 2004

  117. Barthell, EN, Aronsky, D, Cochrane, DG, Cable, G, Stair, T, , . The Frontlines of Medicine Project progress report: standardized communication of emergency department triage data for syndromic surveillance. Ann Emerg Med, 44(3), 247-52, 2004

  118. Brown, LE, Tsamardinos, I, Aliferis, CF. A novel algorithm for scalable and accurate Bayesian network learning. Medinfo, 11(Pt 1), 711-5, 2004

  119. Brown, SH, Elkin, PL, Rosenbloom, ST, Husser, C, Bauer, BA, Lincoln, MJ, Carter, J, Erlbaum, M, Tuttle, MS. VA National Drug File Reference Terminology: a cross-institutional content coverage study. Medinfo, 11(Pt 1), 477-81, 2004

  120. Cox, ER, Frisse, M, Behm, A, Fairman, KA. Over-the-counter pain reliever and aspirin use within a sample of long-term cyclooxygenase 2 users. Arch Intern Med, 164(11), 1243-6, 2004

  121. Dewan, N.A., Lorenzi, N.M., Zheng, S. Overcoming Resistance to New Technology. Behavioral Health Management, 24(1), , 2004

  122. Dishy, V, Harris, PA, Pierce, R, Prasad, HC, Sofowora, G, Bonar, HL, Wood, AJ, Stein, CM. Sildenafil does not improve nitric oxide-mediated endothelium-dependent vascular responses in smokers. Br J Clin Pharmacol, 57(2), 209-12, 2004

  123. E. M. Boczko and T. Young . Basins of attraction for cascading maps. IJBC, 14, 3557-3566, 2004

  124. Friedman, DB, Hill, S, Keller, JW, Merchant, NB, Levy, SE, Coffey, RJ, Caprioli, RM. Proteome analysis of human colon cancer by two-dimensional difference gel electrophoresis and mass spectrometry. Proteomics, 4(3), 793-811, 2004

  125. Frisse, ME, Metzger, J. Information Technology in the Rural Setting: Challenges and More Challenges. J Am Med Inform Assoc, , , 2004

  126. Grogan, EL, Morris, JA, Norris, PR, France, DJ, Ozdas, A, Stiles, RA, Harris, PA, Dawant, BM, Speroff, T. Reduced heart rate volatility: an early predictor of death in trauma patients. Ann Surg, 240(3), 547-54; discussion 554-6, 2004

  127. Grogan, EL, Speroff, T, Deppen, SA, Roumie, CL, Elasy, TA, Dittus, RS, Rosenbloom, ST, Holzman, MD. Improving documentation of patient acuity level using a progress note template. J Am Coll Surg, 199(3), 468-75, 2004

  128. Hardin D, Tsamardinos I, Aliferis CF. A Theoretical Characterization of Linear SVM-Based Feature Selection. The Twenty-First International Conference on Machine Learning (ICML), , , 2004

  129. Hulgan, T, Rosenbloom, ST, Hargrove, F, Talbert, DA, Arbogast, PG, Bansal, P, Miller, RA, Kernodle, DS. Oral quinolones in hospitalized patients: an evaluation of a computerized decision support intervention. J Intern Med, 256(4), 349-57, 2004

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