2013

• Baudoin, J.P., Jinschek, J.R., Boothroyd, C.B., Dunin-Borkowski, R.E. & de Jonge, N., Chromatic aberration-corrected tilt series transmission electron microscopy of nanoparticles in a whole mount macrophage cell. Microsc. Microanal. early-online, 2013. link
• Baudoin, J.P., Jerome, W.G., Kuebel, C. & de Jonge, N., Whole‐cell  analysis  of  low-density  lipoprotein  uptake  by  macrophages  using  STEM  tomography. Plos One 8, e55022-1-8, 2013. link
• Ramachandra, R., Demers, H. & de Jonge, N., The effect of the sample thickness on the lateral- and axial resolution of aberration-corrected scanning transmission electron microscopy. Microsc. Microanal. 19, 93-191, 2013. link

2012

• Demers, H., Poirier-Demers, N., Phillips, M., de Jonge, N. & Drouin, D., Three-dimensional electron energy deposition modeling of cathodoluminescence emission near threading dislocations in GaN and electron-beam lithography exposure parameters for a PMMA resist. Microsc. Microanal. 18, 1220-1228, 2012. link
• Demers, H., Ramachandra, R., Drouin, D. & de Jonge, N., The probe profile and lateral resolution of scanning transmission electron microscopy of thick specimens. Microsc. Microanal. 18, 582-590, 2012. link
• Ring, E.A. & de Jonge, N., Video-frequency scanning transmission electron microscopy of moving gold nanoparticles in liquid. Micron, early online, 2012. link
• Heeres, E.C., Oosterkamp, T.H. & de Jonge, N., Size of localized electron emission sites on a closed multiwalld carbon nanotube. Phys. Rev. Lett. 108, 36804-1-5, 2012. download
• Ramachandra, R. & de Jonge, N., Optimized deconvolution for maximum axial resolution in three-dimensional aberration-corrected scanning transmission electron microscopy. Microsc. Microanal. 18, 218-28, 2012. link

2011

• de Jonge, N. & Ross, F.M., Electron microscopy of specimens in liquid. Nature Nanotechnolog 6, 695-704, 2011. link
• Lupini, A.R., and N. de Jonge, The three-dimensional point spread function of aberration-corrected scanning transmission electron microscopy. Microsc. Microanal. 17, 817-826, 2011. link download
• Demers, H., Poirier-Demers, H., Couture, A.R., Joly, D., Guilmain, M., de Jonge, N. & Drouin, D., Three-dimensional electron microscopy simulation with the CASINO Monte Carlo software. Scanning 33, 135-146, 2011. link
• Ring, E.A., Peckys, D.B., Dukes, M.J., Baudoin, J.P. & de Jonge, N., Silicon nitride windows for electron microscopy of whole cells. J. Microscopy 243, 273-283, 2011. link
• Peckys, D.B., Mazur, P., Gould, K.L. & de Jonge, N., Fully hydrated yeast cells imaged with electron microscopy. Biophys. J. 100, 2522-2529, 2011. link
• Dukes, M.J., Ramachandra, R., Baudoin, J.P., Jerome, W.G. & de Jonge, N., Three-dimensional locations of gold-labeled proteins in a whole mount eukaryotic cell obtained with 3 nm precision using aberration-corrected scanning transmission electron microscopy. J. Struct. Biol. 174, 552-562, 2011. link
• Peckys, D.B. & de Jonge, N., Visualizing Gold Nanoparticle Uptake in Live Cells with Liquid Scanning Transmission Electron Microscopy. Nano Lett. 11, 1733-1738, 2011. link
• Heeres, E.C., Oosterkamp, T.H. & de Jonge, N., Making carbon nanotube electron sources of defined lengths and with closed caps. Nanotechnology 22, 235308-1-8, 2011. link
• Ramachandra, R., Demers, H. & de Jonge, N.,Atomic-resolution scanning transmission electron microscopy through 50-nm-thick silicon nitride membranes. Appl. Phys. Lett. 98, 93109-1-3, 2011. download link
• Klein, K.L., Anderson, I.M. & de Jonge, N. Transmission electron microscopy with a liquid flow cell. J. Microscopy 242, 117-123, 2011. link

2010

• Demers, H., Poirier-Demers, N., Drouin, D. & de Jonge, N., Simulating STEM imaging of nanoparticles in micrometers-thick substrates. Microsc. Microanal. 16, 795-804, 2010. download
• Ring, E.A. & de Jonge, N., Microfluidic system for transmission electron microscopy. Microsc. Microanal. 16, 622-629, 2010. download
• Dukes, M.J., Peckys, D.B. & de Jonge, N., Correlative Fluorescence Microscopy and Scanning Transmission Electron Microscopy of Quantum Dot Labeled Proteins in Whole Cells in Liquid. ACS Nano 4, 4110-4116, 2010. link
• Jarvis, J.D., Andrews, H.L., Ivanov, B., Stewart, C.L., de Jonge, N., Heeres, E.C., Kang, W.P., Wong, Y.M., Davidson, J.L. & Brau, C.A., Resonant tunneling and extreme brightness from diamond field emitters and carbon nanotubes. J. Appl. Phys. 108, 94322-1-6, 2010.
• de Jonge, N., Poirier-Demers, N., Demers, H., Peckys, D.B. & Drouin, D., Nanometer-resolution electron microscopy through micrometers-thick water layers. Ultramicroscopy 110, 1114-1119, 2010. download
• de Jonge, N., Bigelow, W.C. & Veith, G.M., Atmospheric Pressure Scanning Transmission Electron Microscopy. Nano Letters 10, 1028-1031, 2010. link
• de Jonge, N., Sougrat, R., Northan, B. & Pennycook, S.J., Three-dimensional scanning transmission electron microscopy for biological specimen. Microsc. Microanal. 16, 54-63, 2010. download
• de Jonge, N., Fundamental properties of CNT emitters as an electron source. in Carbon nanotube and related field emitters: fundamentals and applications, ed. Saito, Y., (John-Wiley publisher, 2010).

2009

• Peckys, D.B., Veith, G.M., Joy, D.C. & de Jonge, N., Nanoscale Imaging of Whole Cells Using a Liquid Enclosure and a Scanning Transmission Electron Microscope, PLOS One 4, e8214-1-7, 2009. download
• de Jonge, N., Peckys, D.B., Kremers, G.J. & Piston, D.W., Electron microscopy of whole cells in liquid with nanometer resolution. Proc. Natl. Acad. Sci. 106, 2159-2164, 2009. download
• de Jonge, N., Carbon nanotube electron sources for electron microscopes. Advances in Imaging & Electron Physics 156, 203-233, 2009.

2008

• Peckys, D.B., de Jonge, N., Simpson, M.L. & McKnight, T.E., End-specific strategies of attachment of long double stranded DNA onto gold-coated nanofiber arrays. Nanotechnology 19, 435301, 2008.

2007

• de Jonge, N., Sougrat, R., Peckys, D.B., Lupini, A.R. & Pennycook, S.J., 3-dimensional aberration corrected scanning transmission electron microscopy for biology, in Nanotechnology in Biology and Medicine, ed. Vo-Dinh, T., pp. 13.1- 13.27, CRC Press, 2007. download
• Lupini, A.R., Rashkeev, S.N., Varela, M., Borisevich, A.Y., Oxley, M.P., van Benthem, K., Peng, Y., de Jonge, N., Veith, G.M., Chisholm, M.F. & Pennycook, S.J., Scanning transmission electron microscopy, in Nanocharacterization, ed. Kirkland, E.J. & Hutchison, J.L., pp. 28-65 (Royal Society of Chemistry, Cambridge, 2007).
• Edgcombe, C. J. & de Jonge, N., Deduction of work function of carbon nanotube field emitter by use of curved-surface theory. J. Phys. D: Appl. Phys. 40, 4123-4128, 2007.
• Heeres, E.C., Bakkers, E.P.A.M., Roest, A.L., Kaiser, M., Oosterkamp, T.H.. & de Jonge, N., Electron emission from individual indium arsenide semiconductor nanowires. Nano Lett. 72, 536-540, 2007.

2006

• Doytcheva, M., Kaiser & de Jonge, N., In-situ transmission electron microscopy investigation of the structural changes in carbon nanotubes during electron emission at high currents. Nanotechnology 17, 3226-3233, 2006. download
• Kaiser, M., Doytcheva, M., Verheijen, M.A. & de Jonge, N., In-situ transmission electron microscopy of individual free-standing carbon nanotubes. Ultramicroscopy 106, 902-908, 2006.
• Milne, W.I., Teo, K.B.K., Mann, M., Bu, I.Y.Y., Amaratunga, G.A.J., de Jonge, N., Allioux, M., Oostveen, J.T. , Legagneux, P., Minoux, E., Gangloff, L., Hudanski, L., Schnell, J.P., Dieumegard, L.D., Peauger, F., Wells, T. & El-Gomati, M., Carbon nanotubes as electron sources. Phys. Stat. Sol. 203, 1058-1063, 2006.
• Edgcombe, C. J. & de Jonge, N., Properties of a field emitter deduced from curvature of its Fowler-Nordheim plot. J. Vac. Sci. Technol B 24, 869-873, 2006.

2005

• de Jonge, N., Allioux, M., Oostveen, J.T., Teo, K. B. K & Milne, W. I, Low noise and stable emission from carbon nanotube electron sources. Appl. Phys. Lett. 87, 133118-1-3, 2005. link
  
• de Jonge, N., Allioux, M., Oostveen, J.T., Teo, K. B. K & Milne, W. I, The optical performance of carbon nanotube electron sources. Phys. Rev. Lett. 94, 186807-1-4, 2005. download
  
• de Jonge, N., Doytcheva, M., Allioux, M., Kaiser, M., Teo, K. B. K, Lacerda, R. G. & Milne, W. I, Cap closing of thin carbon nanotubes. Adv. Mater. 17, 451, 2005.

2004

• de Jonge, N. & Bonard, J. M., Carbon nanotube electron sources and applications. (review paper) Phil. Trans. R. Soc. Lond. A 362, 2239-2266, 2004. download
• Doytcheva, M., Kaiser, M., Verheijen, M. A., Reyes-Reyes, M., Terrones, M. & de Jonge, N., Electron emission from individual nitrogen-doped multi-walled carbon nanotubes. Chem. Phys. Lett. 396, 126-130, 2004.
  
• De Jonge, N. Allioux, M., Doytcheva, M., Kaiser, M., Teo, K. B. K, Lacerda, R. G. & Milne, W. I, Characterization of the field emission properties of individual thin carbon nanotubes, Appl. Phys. Lett. 85, 1607-1609, 2004. link
  
• de Jonge, N., The brightness of carbon nanotube electron emitters. J. Appl. Phys. 95, 673-681, 2004. link
  

2001-2003

• de Jonge, N., Lamy, Y., & Kaiser, M., Controlled mounting of individual multi-walled carbon nanotubes on support tips. Nano Lett. 3, 1621-1624, 2003.
• de Jonge, N. & van Druten, N. J., Field emission from individual multiwalled carbon nanotubes prepared in an electron microscope. Ultramicroscopy 95, 85-91, 2003.
  
• de Jonge, N., Lamy, Y., Schoots, K., & Oosterkamp, T. H., High brightness electron beam from a multi-walled carbon nanotube. Nature 420, 393-395, 2002.

1994-2000

• Rau, H. K., de Jonge, N. & Haehnel, W., Combinatorial synthesis of four-helix bundle hemoproteins for tuning cofactor properties. Angew. Chem. Int. Ed. 39, 250-253, 2000. download
• de Jonge, N., Rau, H. K. & Haehnel, W., Light induced electron transfer in synthetic metalloproteins. Z. Phys. Chem. 213, 175-180, 1999.
• Rau, H. K., de Jonge, N. & Haehnel, W., Modular synthesis of de novo-designed metalloproteins for light-induced electron transfer. Proc. Natl. Acad. Sci. 95, 11526-11531, 1998. download
• van den Brink, H. B. et al., Neutral-pion electroproduction on the proton near threshold. Phys. Rev. Lett. 74, 3561-3564, 1995.
• Bobeldijk, I. et al., High-momentum protons in /sup 208/Pb. Phys. Rev. Lett. 73, 2684-2687, 1994.