.

MSRC Bioinformatics

MSRC Bioinformatics Software

Name Description Date Added Windows Binaries Source Code
Backup Utility Service v2.1.0 Software to backup directories on an instrument workstation to a central data repository.  Includes service and status components.  09-17-10  BUS  NA
DirecTag Many partial sequences can be inferred from an MS/MS.  DirecTag automates sequence tag inference by scoring inferences on the basis of fragment intensity, m/z fidelity, and complementarity.  07-13-10  DirecTag  Source Code
TagRecon Sequence tags can be leveraged into full-length MS/MS interpretations by reconciling them to database sequences.  TagRecon identifies MS/MS on the basis of tags produced by DirecTag.  7-13-10  TagRecon  Source Code
ID Picker Making sense of raw peptide identifications requires protein assembly. IDPicker is designed to assemble parsimonious protein lists and incorporate experimental hierarchy in reporting confident protein identifications 08-03-07  

IDPicker

(Download the package to install IDPicker)

 Source Code
SQTR Would you like to compare SEQUEST and MYRIMATCH results? Then you need SQTR. SQTR is designed to merge Sequest OUTs into a SQT file, so users can compare their Sequest results to their Myrimatch results 1-09-07  

SQTR

(Download the package to install SQTR)

 Source Code
ReAdw We have a version of ReAdW that can translate Thermo RAW files into MZDATA and MZXML. 1-09-07    
Bumbershoot/
Myrimatch
Documentation Available Here  2-07-07  

Myrimatch/DbValidate

(Download this package to install FragMINT. NOTE you will need to be connected to the Internet to properly use FragMINT.)

 Instructions for obtaining MyriMatch source are available here.
PMOD Version II Visual Basic 6.0 Source PMOD is a system designed to discover in MS/MS spectra, singly charged peptides with know or unknown post translational modifications. Here you will find the source code for PMOD as written in VB6.0. This version supports spectra files in MZDATA and MZXML formats. 7-25-06  N/A  PMOD Version II Source Files
Compiled PMOD Version II BetaVI With .RAW Support For Windows This is the full Windows forms setup package for PMOD. It supports spectra files in the Thermo-Fischer RAW file format, along with spectra in MZDATA and MZXML formats. NOTE you will need to have either the Full Thermo V2.0 software package installed. 7-25-06  Pmod.zip with .RAW file support (Download this package to install PMOD Version II.)  N/A
Compiled PMOD Version II BetaVI Windows, NO ".RAW" Support This is the full Windows forms setup package for PMOD that supports spectra files in MZDATA and MZXML formats only. 7-25-06 Pmod.zip WITHOUT .RAW file support (Download this package to install PMOD Version II. for MZData and MZXML files only.) N/A
FragMINT Shotgun Proteomics Tool
7-25-06 FragMINT(Download this package to install FragMINT. NOTE: You will need to be connected to the Internet to properly use FragMINT.)  N/A

 

This page was last updated May 10, 2011 and is maintained by